J3_5NJT_014

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

5NJT|1|U|U|301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NJT_014 not in the Motif Atlas

Homologous match to J3_7A0S_003

Geometric discrepancy: 0.2135

The information below is about J3_7A0S_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

5NJT|1|U|C|272
5NJT|1|U|A|273
5NJT|1|U|A|274
5NJT|1|U|A|275
5NJT|1|U|C|276
*
5NJT|1|U|G|295
5NJT|1|U|G|296
5NJT|1|U|G|297
5NJT|1|U|U|298
5NJT|1|U|U|299
5NJT|1|U|G|300
5NJT|1|U|U|301
5NJT|1|U|A|302
*
5NJT|1|U|U|416
5NJT|1|U|G|417

Current chains

Chain U

23S ribosomal RNA

Nearby chains