J3_5NJT_017

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NJT_017 not in the Motif Atlas

Homologous match to J3_5J7L_040

Geometric discrepancy: 0.3173

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

5NJT|1|U|G|1101
5NJT|1|U|G|1102
5NJT|1|U|A|1103
*
5NJT|1|U|U|1127
5NJT|1|U|U|1128
5NJT|1|U|U|1129
5NJT|1|U|A|1130
5NJT|1|U|A|1131
5NJT|1|U|A|1132
5NJT|1|U|G|1133
*
5NJT|1|U|C|1148
5NJT|1|U|A|1149
5NJT|1|U|C|1150

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L10