J3_5NJT_018

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAAUG*CGA*UAAG

Length

13 nucleotides

Bulged bases

5NJT|1|U|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NJT_018 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.2194

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5NJT|1|U|C|1337
5NJT|1|U|G|1338
5NJT|1|U|A|1339
5NJT|1|U|A|1340
5NJT|1|U|U|1341
5NJT|1|U|G|1342
*
5NJT|1|U|C|1670
5NJT|1|U|G|1671
5NJT|1|U|A|1672
*
5NJT|1|U|U|1684
5NJT|1|U|A|1685
5NJT|1|U|A|1686
5NJT|1|U|G|1687

Current chains

Chain U

23S ribosomal RNA

Nearby chains