J3_5NJT_019

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUAAG*CGCAAAC*GUAG

Length

16 nucleotides

Bulged bases

5NJT|1|U|A|1654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NJT_019 not in the Motif Atlas

Homologous match to J3_4WF9_005

Geometric discrepancy: 0.236

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

5NJT|1|U|C|1344
5NJT|1|U|U|1345
5NJT|1|U|A|1346
5NJT|1|U|A|1347
5NJT|1|U|G|1348
*
5NJT|1|U|C|1650
5NJT|1|U|G|1651
5NJT|1|U|C|1652
5NJT|1|U|A|1653
5NJT|1|U|A|1654
5NJT|1|U|A|1655
5NJT|1|U|C|1656
*
5NJT|1|U|G|1665
5NJT|1|U|U|1666
5NJT|1|U|A|1667
5NJT|1|U|G|1668

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain r

50S ribosomal protein L34