J3_5NJT_020

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCGGGAC*GACAA*UA

Length

14 nucleotides

Bulged bases

5NJT|1|U|C|1384, 5NJT|1|U|A|1388, 5NJT|1|U|A|1423

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NJT_020 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.2217

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

5NJT|1|U|U|1383
5NJT|1|U|C|1384
5NJT|1|U|G|1385
5NJT|1|U|G|1386
5NJT|1|U|G|1387
5NJT|1|U|A|1388
5NJT|1|U|C|1389
*
5NJT|1|U|G|1420
5NJT|1|U|A|1421
5NJT|1|U|C|1422
5NJT|1|U|A|1423
5NJT|1|U|A|1424
*
5NJT|1|U|U|1441
5NJT|1|U|A|1442

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain m

50S ribosomal protein L23