J3_5NJT_021
3D structure
- PDB id
- 5NJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AUUG*CUAACC*GAGACAGU
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NJT_021 not in the Motif Atlas
- Geometric match to J3_5TBW_012
- Geometric discrepancy: 0.2944
- The information below is about J3_5TBW_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_18654.1
- Basepair signature
- cWW-F-F-tSH-tHW-F-F-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
5NJT|1|U|A|2119
5NJT|1|U|U|2120
5NJT|1|U|U|2121
5NJT|1|U|G|2122
*
5NJT|1|U|C|2225
5NJT|1|U|U|2226
5NJT|1|U|A|2227
5NJT|1|U|A|2228
5NJT|1|U|C|2229
5NJT|1|U|C|2230
*
5NJT|1|U|G|2251
5NJT|1|U|A|2252
5NJT|1|U|G|2253
5NJT|1|U|A|2254
5NJT|1|U|C|2255
5NJT|1|U|A|2256
5NJT|1|U|G|2257
5NJT|1|U|U|2258
Current chains
- Chain U
- 23S ribosomal RNA
Nearby chains
- Chain W
- 50S ribosomal protein L2
- Chain u
- 50S ribosomal protein L28
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