J3_5NJT_023

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

5NJT|1|U|A|2547, 5NJT|1|U|U|2548

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NJT_023 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.1897

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

5NJT|1|U|C|2546
5NJT|1|U|A|2547
5NJT|1|U|U|2548
5NJT|1|U|C|2549
*
5NJT|1|U|G|2574
5NJT|1|U|U|2575
5NJT|1|U|U|2576
*
5NJT|1|U|A|2590
5NJT|1|U|U|2591
5NJT|1|U|U|2592
5NJT|1|U|A|2593
5NJT|1|U|A|2594
5NJT|1|U|A|2595
5NJT|1|U|G|2596

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L14