J3_5NJT_024

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAU*AGUAAG*CGAGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NJT_024 not in the Motif Atlas

Homologous match to J3_7A0S_012

Geometric discrepancy: 0.3024

The information below is about J3_7A0S_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_20574.1

Basepair signature

cWW-F-F-tWH-cWW-tSS-F-tHS-F-cWW

Number of instances in this motif group

1

Unit IDs

5NJT|1|U|C|2818
5NJT|1|U|A|2819
5NJT|1|U|U|2820
*
5NJT|1|U|A|2831
5NJT|1|U|G|2832
5NJT|1|U|U|2833
5NJT|1|U|A|2834
5NJT|1|U|A|2835
5NJT|1|U|G|2836
*
5NJT|1|U|C|2914
5NJT|1|U|G|2915
5NJT|1|U|A|2916
5NJT|1|U|G|2917
5NJT|1|U|G|2918

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L3