J3_5NJT_028
3D structure
- PDB id
- 5NJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NJT_028 not in the Motif Atlas
- Homologous match to J3_4LFB_002
- Geometric discrepancy: 0.1315
- The information below is about J3_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85722.1
- Basepair signature
- cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW
- Number of instances in this motif group
- 5
Unit IDs
5NJT|1|A|C|946
5NJT|1|A|A|947
5NJT|1|A|A|948
5NJT|1|A|G|949
*
5NJT|1|A|C|1353
5NJT|1|A|U|1354
5NJT|1|A|A|1355
5NJT|1|A|G|1356
5NJT|1|A|U|1357
5NJT|1|A|A|1358
5NJT|1|A|A|1359
*
5NJT|1|A|U|1381
5NJT|1|A|G|1382
5NJT|1|A|A|1383
5NJT|1|A|A|1384
5NJT|1|A|U|1385
5NJT|1|A|A|1386
5NJT|1|A|C|1387
5NJT|1|A|G|1388
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain G
- 30S ribosomal protein S7
- Chain I
- 30S ribosomal protein S9
Coloring options: