J3_5NO4_010

3D structure

PDB id

5NO4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate with uS3)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.16 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

5NO4|1|A|U|1086, 5NO4|1|A|A|1101

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NO4_010 not in the Motif Atlas

Homologous match to J3_5J7L_009

Geometric discrepancy: 0.1451

The information below is about J3_5J7L_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

5NO4|1|A|U|1073
5NO4|1|A|G|1074
*
5NO4|1|A|U|1083
5NO4|1|A|G|1084
5NO4|1|A|U|1085
5NO4|1|A|U|1086
5NO4|1|A|G|1087
*
5NO4|1|A|C|1098
5NO4|1|A|G|1099
5NO4|1|A|C|1100
5NO4|1|A|A|1101
5NO4|1|A|A|1102

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain E

30S ribosomal protein S5