J3_5NP6_006
3D structure
- PDB id
- 5NP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S structure prior to bypassing
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUACC*GGGCUA
- Length
- 27 nucleotides
- Bulged bases
- 5NP6|1|D|A|975, 5NP6|1|D|G|976, 5NP6|1|D|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NP6_006 not in the Motif Atlas
- Homologous match to J3_6CZR_062
- Geometric discrepancy: 0.1758
- The information below is about J3_6CZR_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_59791.1
- Basepair signature
- cWW-F-F-F-F-F-tSS-F-F-F-F-F-F-F-F-F-F-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
5NP6|1|D|U|955
5NP6|1|D|U|956
5NP6|1|D|U|957
5NP6|1|D|A|958
5NP6|1|D|A|959
5NP6|1|D|U|960
5NP6|1|D|U|961
5NP6|1|D|C|962
*
5NP6|1|D|G|973
5NP6|1|D|A|974
5NP6|1|D|A|975
5NP6|1|D|G|976
5NP6|1|D|A|977
5NP6|1|D|A|978
5NP6|1|D|C|979
5NP6|1|D|C|980
5NP6|1|D|U|981
5NP6|1|D|U|982
5NP6|1|D|A|983
5NP6|1|D|C|984
5NP6|1|D|C|985
*
5NP6|1|D|G|1220
5NP6|1|D|G|1221
5NP6|1|D|G|1222
5NP6|1|D|C|1223
5NP6|1|D|U|1224
5NP6|1|D|A|1225
Current chains
- Chain D
- 16S ribosomal RNA
Nearby chains
- Chain A
- mRNA
- Chain M
- 30S ribosomal protein S10
- Chain P
- 30S ribosomal protein S13
- Chain Q
- 30S ribosomal protein S14
- Chain V
- 30S ribosomal protein S19
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