J3_5NP6_026

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

5NP6|1|D|C|48, 5NP6|1|D|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NP6_026 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.1205

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5NP6|1|D|G|46
5NP6|1|D|C|47
5NP6|1|D|C|48
5NP6|1|D|U|49
5NP6|1|D|A|50
5NP6|1|D|A|51
5NP6|1|D|C|52
*
5NP6|1|D|G|359
5NP6|1|D|G|360
5NP6|1|D|G|361
5NP6|1|D|G|362
5NP6|1|D|A|363
5NP6|1|D|A|364
5NP6|1|D|U|365
5NP6|1|D|A|366
5NP6|1|D|U|367
*
5NP6|1|D|A|393
5NP6|1|D|G|394
5NP6|1|D|C|395

Current chains

Chain D

16S ribosomal RNA

Nearby chains

Chain O

30S ribosomal protein S12

Chain S

30S ribosomal protein S16