J3_5NP6_032
3D structure
- PDB id
- 5NP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S structure prior to bypassing
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 5NP6|1|Y|U|34, 5NP6|1|Y|U|448, 5NP6|1|Y|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NP6_032 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.1322
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
5NP6|1|Y|C|32
5NP6|1|Y|C|33
5NP6|1|Y|U|34
5NP6|1|Y|G|35
*
5NP6|1|Y|C|445
5NP6|1|Y|G|446
5NP6|1|Y|A|447
5NP6|1|Y|U|448
5NP6|1|Y|A|449
5NP6|1|Y|G|450
5NP6|1|Y|U|451
5NP6|1|Y|G|452
5NP6|1|Y|A|453
5NP6|1|Y|A|454
5NP6|1|Y|C|455
5NP6|1|Y|C|456
5NP6|1|Y|A|457
5NP6|1|Y|G|458
5NP6|1|Y|U|459
5NP6|1|Y|A|460
5NP6|1|Y|C|461
*
5NP6|1|Y|G|468
5NP6|1|Y|G|469
5NP6|1|Y|A|470
5NP6|1|Y|A|471
5NP6|1|Y|A|472
5NP6|1|Y|G|473
Current chains
- Chain Y
- 23S ribosomal RNA
Nearby chains
- Chain 0
- 50S ribosomal protein L34
- Chain C
- DNA topoisomerase small subunit
- Chain c
- 50S ribosomal protein L4
- Chain o
- 50S ribosomal protein L20
- Chain r
- 50S ribosomal protein L23
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