J3_5NRG_004

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

UGAUCUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

5NRG|1|X|U|731, 5NRG|1|X|G|837, 5NRG|1|X|A|838

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NRG_004 not in the Motif Atlas

Homologous match to J3_4WF9_002

Geometric discrepancy: 0.0624

The information below is about J3_4WF9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5NRG|1|X|U|728
5NRG|1|X|G|729
5NRG|1|X|A|730
5NRG|1|X|U|731
5NRG|1|X|C|732
5NRG|1|X|U|733
5NRG|1|X|A|734
*
5NRG|1|X|U|818
5NRG|1|X|A|819
5NRG|1|X|G|820
*
5NRG|1|X|C|836
5NRG|1|X|G|837
5NRG|1|X|A|838
5NRG|1|X|A|839

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain A

50S ribosomal protein L2