J3_5NRG_012

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

5NRG|1|X|A|2545

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NRG_012 not in the Motif Atlas

Homologous match to J3_4WF9_009

Geometric discrepancy: 0.0493

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

5NRG|1|X|C|2544
5NRG|1|X|A|2545
5NRG|1|X|U|2546
5NRG|1|X|C|2547
*
5NRG|1|X|G|2572
5NRG|1|X|U|2573
5NRG|1|X|U|2574
*
5NRG|1|X|A|2588
5NRG|1|X|U|2589
5NRG|1|X|U|2590
5NRG|1|X|A|2591
5NRG|1|X|A|2592
5NRG|1|X|A|2593
5NRG|1|X|G|2594

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L14