J3_5NRG_013

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CA*UAUAAG*CGAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NRG_013 not in the Motif Atlas

Homologous match to J3_7RQB_013

Geometric discrepancy: 0.2869

The information below is about J3_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_24416.1

Basepair signature

cWW-F-F-tWH-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

5NRG|1|X|C|2816
5NRG|1|X|A|2817
*
5NRG|1|X|U|2826
5NRG|1|X|A|2827
5NRG|1|X|U|2828
5NRG|1|X|A|2829
5NRG|1|X|A|2830
5NRG|1|X|G|2831
*
5NRG|1|X|C|2909
5NRG|1|X|G|2910
5NRG|1|X|A|2911
5NRG|1|X|A|2912
5NRG|1|X|G|2913

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain P

50S ribosomal protein L22