J3_5NWY_004
3D structure
- PDB id
- 5NWY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUUG*CGGAG*CGUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 5NWY|1|0|U|871
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NWY_004 not in the Motif Atlas
- Homologous match to J3_5J7L_004
- Geometric discrepancy: 0.0662
- The information below is about J3_5J7L_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85054.4
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
5NWY|1|0|C|826
5NWY|1|0|U|827
5NWY|1|0|U|828
5NWY|1|0|G|829
*
5NWY|1|0|C|857
5NWY|1|0|G|858
5NWY|1|0|G|859
5NWY|1|0|A|860
5NWY|1|0|G|861
*
5NWY|1|0|C|868
5NWY|1|0|G|869
5NWY|1|0|U|870
5NWY|1|0|U|871
5NWY|1|0|A|872
5NWY|1|0|A|873
5NWY|1|0|G|874
Current chains
- Chain 0
- 16S rRNA
Nearby chains
- Chain 1
- 30S ribosomal protein S2
- Chain 7
- 30S ribosomal protein S8
- Chain K
- 30S ribosomal protein S21
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