J3_5NWY_013

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

5NWY|1|0|U|1240, 5NWY|1|0|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NWY_013 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.1273

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

5NWY|1|0|C|1237
5NWY|1|0|A|1238
5NWY|1|0|A|1239
5NWY|1|0|U|1240
5NWY|1|0|G|1241
*
5NWY|1|0|C|1296
5NWY|1|0|G|1297
5NWY|1|0|U|1298
5NWY|1|0|A|1299
5NWY|1|0|G|1300
5NWY|1|0|U|1301
5NWY|1|0|C|1302
5NWY|1|0|C|1303
*
5NWY|1|0|G|1334
5NWY|1|0|U|1335
5NWY|1|0|C|1336
5NWY|1|0|G|1337

Current chains

Chain 0

16S rRNA

Nearby chains

Chain 6

30S ribosomal protein S7

Chain C

30S ribosomal protein S13