J3_5NWY_019

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

5NWY|1|N|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NWY_019 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.078

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5NWY|1|N|C|1298
5NWY|1|N|G|1299
5NWY|1|N|G|1300
5NWY|1|N|A|1301
5NWY|1|N|A|1302
5NWY|1|N|G|1303
*
5NWY|1|N|C|1625
5NWY|1|N|A|1626
5NWY|1|N|G|1627
*
5NWY|1|N|C|1639
5NWY|1|N|A|1640
5NWY|1|N|A|1641
5NWY|1|N|G|1642

Current chains

Chain N

23S rRNA

Nearby chains