J3_5NWY_028
3D structure
- PDB id
- 5NWY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCCUAAC*GGGGAAUAU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 5NWY|1|0|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NWY_028 not in the Motif Atlas
- Homologous match to J3_5J7L_050
- Geometric discrepancy: 0.0716
- The information below is about J3_5J7L_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5NWY|1|0|G|46
5NWY|1|0|C|47
5NWY|1|0|C|48
5NWY|1|0|U|49
5NWY|1|0|A|50
5NWY|1|0|A|51
5NWY|1|0|C|52
*
5NWY|1|0|G|359
5NWY|1|0|G|360
5NWY|1|0|G|361
5NWY|1|0|G|362
5NWY|1|0|A|363
5NWY|1|0|A|364
5NWY|1|0|U|365
5NWY|1|0|A|366
5NWY|1|0|U|367
*
5NWY|1|0|A|393
5NWY|1|0|G|394
5NWY|1|0|C|395
Current chains
- Chain 0
- 16S rRNA
Nearby chains
- Chain B
- 30S ribosomal protein S12
- Chain F
- 30S ribosomal protein S16
Coloring options: