J3_5O2R_032

3D structure

PDB id

5O2R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5O2R_032 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.1012

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5O2R|1|A|G|1424
5O2R|1|A|G|1425
5O2R|1|A|G|1426
5O2R|1|A|A|1427
5O2R|1|A|C|1428
5O2R|1|A|G|1429
*
5O2R|1|A|C|1564
5O2R|1|A|C|1565
*
5O2R|1|A|G|1568
5O2R|1|A|A|1569
5O2R|1|A|A|1570
5O2R|1|A|A|1571
5O2R|1|A|A|1572
5O2R|1|A|G|1573
5O2R|1|A|C|1574

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2