J3_5O2R_035
3D structure
- PDB id
- 5O2R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GCCUAAC*GGGGAAUAU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 5O2R|1|a|C|48, 5O2R|1|a|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5O2R_035 not in the Motif Atlas
- Homologous match to J3_5J7L_050
- Geometric discrepancy: 0.1055
- The information below is about J3_5J7L_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5O2R|1|a|G|46
5O2R|1|a|C|47
5O2R|1|a|C|48
5O2R|1|a|U|49
5O2R|1|a|A|50
5O2R|1|a|A|51
5O2R|1|a|C|52
*
5O2R|1|a|G|359
5O2R|1|a|G|360
5O2R|1|a|G|361
5O2R|1|a|G|362
5O2R|1|a|A|363
5O2R|1|a|A|364
5O2R|1|a|U|365
5O2R|1|a|A|366
5O2R|1|a|U|367
*
5O2R|1|a|A|393
5O2R|1|a|G|394
5O2R|1|a|C|395
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain l
- 30S ribosomal protein S12
- Chain p
- 30S ribosomal protein S16
Coloring options: