J3_5O2R_037
3D structure
- PDB id
- 5O2R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CUUGACAU*ACAG*CUUACG
- Length
- 18 nucleotides
- Bulged bases
- 5O2R|1|a|U|1212, 5O2R|1|a|C|1214
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5O2R_037 not in the Motif Atlas
- Homologous match to J3_4LFB_016
- Geometric discrepancy: 0.1549
- The information below is about J3_4LFB_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28881.1
- Basepair signature
- cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW
- Number of instances in this motif group
- 2
Unit IDs
5O2R|1|a|C|990
5O2R|1|a|U|991
5O2R|1|a|U|992
5O2R|1|a|G|993
5O2R|1|a|A|994
5O2R|1|a|C|995
5O2R|1|a|A|996
5O2R|1|a|U|997
*
5O2R|1|a|A|1044
5O2R|1|a|C|1045
5O2R|1|a|A|1046
5O2R|1|a|G|1047
*
5O2R|1|a|C|1210
5O2R|1|a|U|1211
5O2R|1|a|U|1212
5O2R|1|a|A|1213
5O2R|1|a|C|1214
5O2R|1|a|G|1215
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain n
- 30S ribosomal protein S14
- Chain v
- Peptide chain release factor RF1
Coloring options: