J3_5O5J_004

3D structure

PDB id

5O5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S small ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

CUAG*CGUAG*CAUUAAG

Length

16 nucleotides

Bulged bases

5O5J|1|A|U|853

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5O5J_004 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1151

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

5O5J|1|A|C|806
5O5J|1|A|U|807
5O5J|1|A|A|808
5O5J|1|A|G|809
*
5O5J|1|A|C|839
5O5J|1|A|G|840
5O5J|1|A|U|841
5O5J|1|A|A|842
5O5J|1|A|G|843
*
5O5J|1|A|C|850
5O5J|1|A|A|851
5O5J|1|A|U|852
5O5J|1|A|U|853
5O5J|1|A|A|854
5O5J|1|A|A|855
5O5J|1|A|G|856

Current chains

Chain A

16S rRNA

Nearby chains

Chain H

30S ribosomal protein S8

Chain V

30S ribosomal protein S2