J3_5O5J_016
3D structure
- PDB id
- 5O5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 30S small ribosomal subunit from Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.45 Å
Loop
- Sequence
- UUUGACAU*GCAG*CUUAUG
- Length
- 18 nucleotides
- Bulged bases
- 5O5J|1|A|U|1195
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5O5J_016 not in the Motif Atlas
- Homologous match to J3_4LFB_016
- Geometric discrepancy: 0.2113
- The information below is about J3_4LFB_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28881.1
- Basepair signature
- cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW
- Number of instances in this motif group
- 2
Unit IDs
5O5J|1|A|U|972
5O5J|1|A|U|973
5O5J|1|A|U|974
5O5J|1|A|G|975
5O5J|1|A|A|976
5O5J|1|A|C|977
5O5J|1|A|A|978
5O5J|1|A|U|979
*
5O5J|1|A|G|1024
5O5J|1|A|C|1025
5O5J|1|A|A|1026
5O5J|1|A|G|1027
*
5O5J|1|A|C|1191
5O5J|1|A|U|1192
5O5J|1|A|U|1193
5O5J|1|A|A|1194
5O5J|1|A|U|1195
5O5J|1|A|G|1196
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain C
- 30S ribosomal protein S3
- Chain N
- 30S ribosomal protein S14 type Z
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