J3_5O60_006

3D structure

PDB id

5O60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

GGA*UUGAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5O60_006 not in the Motif Atlas

Homologous match to J3_5J7L_040

Geometric discrepancy: 0.1384

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

5O60|1|A|G|1173
5O60|1|A|G|1174
5O60|1|A|A|1175
*
5O60|1|A|U|1199
5O60|1|A|U|1200
5O60|1|A|G|1201
5O60|1|A|A|1202
5O60|1|A|A|1203
5O60|1|A|A|1204
5O60|1|A|G|1205
*
5O60|1|A|C|1220
5O60|1|A|A|1221
5O60|1|A|C|1222

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L10

Chain J

50S ribosomal protein L11

Chain f

50S ribosomal protein L36