J3_5O60_009

3D structure

PDB id

5O60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

UCGGGAC*GACAA*UA

Length

14 nucleotides

Bulged bases

5O60|1|A|A|1499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5O60_009 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.1432

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

5O60|1|A|U|1459
5O60|1|A|C|1460
5O60|1|A|G|1461
5O60|1|A|G|1462
5O60|1|A|G|1463
5O60|1|A|A|1464
5O60|1|A|C|1465
*
5O60|1|A|G|1496
5O60|1|A|A|1497
5O60|1|A|C|1498
5O60|1|A|A|1499
5O60|1|A|A|1500
*
5O60|1|A|U|1517
5O60|1|A|A|1518

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L23

Chain d

50S ribosomal protein L34