J3_5O61_013
3D structure
- PDB id
- 5O61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The complete structure of the Mycobacterium smegmatis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.31 Å
Loop
- Sequence
- UCGGGAC*GACAA*UA
- Length
- 14 nucleotides
- Bulged bases
- 5O61|1|A|A|1499
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5O61_013 not in the Motif Atlas
- Homologous match to J3_9DFE_012
- Geometric discrepancy: 0.1584
- The information below is about J3_9DFE_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_31965.2
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
5O61|1|A|U|1459
5O61|1|A|C|1460
5O61|1|A|G|1461
5O61|1|A|G|1462
5O61|1|A|G|1463
5O61|1|A|A|1464
5O61|1|A|C|1465
*
5O61|1|A|G|1496
5O61|1|A|A|1497
5O61|1|A|C|1498
5O61|1|A|A|1499
5O61|1|A|A|1500
*
5O61|1|A|U|1517
5O61|1|A|A|1518
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain U
- 50S ribosomal protein L23
- Chain d
- 50S ribosomal protein L34
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