J3_5O61_019
3D structure
- PDB id
- 5O61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The complete structure of the Mycobacterium smegmatis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.31 Å
Loop
- Sequence
- CAUC*GUU*AUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 5O61|1|A|A|2742, 5O61|1|A|U|2743
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5O61_019 not in the Motif Atlas
- Homologous match to J3_4WF9_009
- Geometric discrepancy: 0.1154
- The information below is about J3_4WF9_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.5
- Basepair signature
- cWW-tWH-cHW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
5O61|1|A|C|2741
5O61|1|A|A|2742
5O61|1|A|U|2743
5O61|1|A|C|2744
*
5O61|1|A|G|2769
5O61|1|A|U|2770
5O61|1|A|U|2771
*
5O61|1|A|A|2785
5O61|1|A|U|2786
5O61|1|A|U|2787
5O61|1|A|A|2788
5O61|1|A|A|2789
5O61|1|A|A|2790
5O61|1|A|G|2791
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain D
- 50S ribosomal protein L3
- Chain L
- 50S ribosomal protein L14
Coloring options: