J3_5O61_028

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5O61_028 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0678

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

5O61|1|BA|C|918
5O61|1|BA|A|919
5O61|1|BA|A|920
5O61|1|BA|G|921
*
5O61|1|BA|C|1326
5O61|1|BA|U|1327
5O61|1|BA|A|1328
5O61|1|BA|G|1329
5O61|1|BA|U|1330
5O61|1|BA|A|1331
5O61|1|BA|A|1332
*
5O61|1|BA|U|1355
5O61|1|BA|G|1356
5O61|1|BA|A|1357
5O61|1|BA|A|1358
5O61|1|BA|U|1359
5O61|1|BA|A|1360
5O61|1|BA|C|1361
5O61|1|BA|G|1362

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BG

30S ribosomal protein S7

Chain BI

30S ribosomal protein S9