3D structure

PDB id
5O61 (explore in PDB, NAKB, or RNA 3D Hub)
Description
The complete structure of the Mycobacterium smegmatis 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.31 Å

Loop

Sequence
CAAG*CUAGUAA*UGAAUACG
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5O61_028 not in the Motif Atlas
Homologous match to J3_4LFB_002
Geometric discrepancy: 0.0678
The information below is about J3_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_25303.4
Basepair signature
cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
Number of instances in this motif group
4

Unit IDs

5O61|1|BA|C|918
5O61|1|BA|A|919
5O61|1|BA|A|920
5O61|1|BA|G|921
*
5O61|1|BA|C|1326
5O61|1|BA|U|1327
5O61|1|BA|A|1328
5O61|1|BA|G|1329
5O61|1|BA|U|1330
5O61|1|BA|A|1331
5O61|1|BA|A|1332
*
5O61|1|BA|U|1355
5O61|1|BA|G|1356
5O61|1|BA|A|1357
5O61|1|BA|A|1358
5O61|1|BA|U|1359
5O61|1|BA|A|1360
5O61|1|BA|C|1361
5O61|1|BA|G|1362

Current chains

Chain BA
16S rRNA

Nearby chains

Chain BG
30S ribosomal protein S7
Chain BI
30S ribosomal protein S9

Coloring options:


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