3D structure

PDB id
5O61 (explore in PDB, NAKB, or RNA 3D Hub)
Description
The complete structure of the Mycobacterium smegmatis 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.31 Å

Loop

Sequence
CGUCAG*CGCAACC*GAUGACG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5O61_034 not in the Motif Atlas
Homologous match to J3_4LFB_007
Geometric discrepancy: 0.1308
The information below is about J3_4LFB_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_08394.3
Basepair signature
cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

5O61|1|BA|C|1043
5O61|1|BA|G|1044
5O61|1|BA|U|1045
5O61|1|BA|C|1046
5O61|1|BA|A|1047
5O61|1|BA|G|1048
*
5O61|1|BA|C|1087
5O61|1|BA|G|1088
5O61|1|BA|C|1089
5O61|1|BA|A|1090
5O61|1|BA|A|1091
5O61|1|BA|C|1092
5O61|1|BA|C|1093
*
5O61|1|BA|G|1168
5O61|1|BA|A|1169
5O61|1|BA|U|1170
5O61|1|BA|G|1171
5O61|1|BA|A|1172
5O61|1|BA|C|1173
5O61|1|BA|G|1174

Current chains

Chain BA
16S rRNA

Nearby chains

Chain BC
30S ribosomal protein S3
Chain BE
30S ribosomal protein S5
Chain BG
30S ribosomal protein S7
Chain BI
30S ribosomal protein S9
Chain BJ
30S ribosomal protein S10
Chain BN
30S ribosomal protein S14 type Z
Chain BV
30S ribosomal protein S2

Coloring options:


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