J3_5O61_038

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CAAUG*CUCAGUUC*GUCG

Length

17 nucleotides

Bulged bases

5O61|1|BA|U|1221, 5O61|1|BA|U|1284

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5O61_038 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1145

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

5O61|1|BA|C|1218
5O61|1|BA|A|1219
5O61|1|BA|A|1220
5O61|1|BA|U|1221
5O61|1|BA|G|1222
*
5O61|1|BA|C|1278
5O61|1|BA|U|1279
5O61|1|BA|C|1280
5O61|1|BA|A|1281
5O61|1|BA|G|1282
5O61|1|BA|U|1283
5O61|1|BA|U|1284
5O61|1|BA|C|1285
*
5O61|1|BA|G|1316
5O61|1|BA|U|1317
5O61|1|BA|C|1318
5O61|1|BA|G|1319

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BG

30S ribosomal protein S7

Chain BM

30S ribosomal protein S13