J3_5O61_039

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

UG*UGUU*GCAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5O61_039 not in the Motif Atlas

Homologous match to J3_4LFB_017

Geometric discrepancy: 0.0904

The information below is about J3_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_79369.1

Basepair signature

cWW-cWW-tSS-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

5O61|1|BA|U|1053
5O61|1|BA|G|1054
*
5O61|1|BA|U|1063
5O61|1|BA|G|1064
5O61|1|BA|U|1065
5O61|1|BA|U|1066
*
5O61|1|BA|G|1079
5O61|1|BA|C|1080
5O61|1|BA|A|1081
5O61|1|BA|A|1082

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BE

30S ribosomal protein S5

Chain BV

30S ribosomal protein S2