J3_5OA3_008

3D structure

PDB id

5OA3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 40S-eIF2D-re-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

5OA3|1|2|G|1274, 5OA3|1|2|G|1507, 5OA3|1|2|U|1509

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5OA3_008 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.2387

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

5OA3|1|2|C|1272
5OA3|1|2|C|1273
5OA3|1|2|G|1274
5OA3|1|2|G|1275
5OA3|1|2|A|1276
5OA3|1|2|C|1277
*
5OA3|1|2|G|1320
5OA3|1|2|G|1321
5OA3|1|2|G|1322
5OA3|1|2|U|1323
5OA3|1|2|G|1324
*
5OA3|1|2|U|1504
5OA3|1|2|U|1505
5OA3|1|2|A|1506
5OA3|1|2|G|1507
5OA3|1|2|A|1508
5OA3|1|2|U|1509
5OA3|1|2|G|1510

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain K

40S ribosomal protein S10

Chain d

40S ribosomal protein S29

Chain f

Ribosomal protein S27a