J3_5ON6_025

3D structure

PDB id

5ON6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of haemanthamine bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

5ON6|1|6|A|1217, 5ON6|1|6|G|1445, 5ON6|1|6|C|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5ON6_025 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.0707

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

5ON6|1|6|C|1215
5ON6|1|6|C|1216
5ON6|1|6|A|1217
5ON6|1|6|G|1218
5ON6|1|6|A|1219
5ON6|1|6|C|1220
*
5ON6|1|6|G|1263
5ON6|1|6|G|1264
5ON6|1|6|G|1265
5ON6|1|6|U|1266
5ON6|1|6|G|1267
*
5ON6|1|6|U|1442
5ON6|1|6|U|1443
5ON6|1|6|A|1444
5ON6|1|6|G|1445
5ON6|1|6|A|1446
5ON6|1|6|C|1447
5ON6|1|6|G|1448

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c0

40S ribosomal protein S10-A

Chain d9

40S ribosomal protein S29-A