J3_5ON6_046
3D structure
- PDB id
- 5ON6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of haemanthamine bound to the 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 5ON6|1|AR|A|817, 5ON6|1|AR|G|924
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5ON6_046 not in the Motif Atlas
- Homologous match to J3_8C3A_003
- Geometric discrepancy: 0.0676
- The information below is about J3_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
5ON6|1|AR|U|814
5ON6|1|AR|G|815
5ON6|1|AR|A|816
5ON6|1|AR|A|817
5ON6|1|AR|C|818
5ON6|1|AR|U|819
5ON6|1|AR|A|820
*
5ON6|1|AR|U|905
5ON6|1|AR|A|906
5ON6|1|AR|G|907
*
5ON6|1|AR|C|923
5ON6|1|AR|G|924
5ON6|1|AR|A|925
5ON6|1|AR|A|926
Current chains
- Chain AR
- 25S ribosomal RNA
Nearby chains
- Chain CD
- 60S ribosomal protein L2-A
- Chain CP
- 60S ribosomal protein L15-A
- Chain DL
- 60S ribosomal protein L37-A
- Chain DN
- 60S ribosomal protein L39
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