3D structure

PDB id
8C3A (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of ailanthone bound to the Candida albicans 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UGAACUA*UAG*CGAA
Length
14 nucleotides
Bulged bases
8C3A|1|1|A|813, 8C3A|1|1|G|920
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_39238.5
Basepair signature
cWW-tWH-cWW-tSW-F-F-cWW
Number of instances in this motif group
7

Unit IDs

8C3A|1|1|U|810
8C3A|1|1|G|811
8C3A|1|1|A|812
8C3A|1|1|A|813
8C3A|1|1|C|814
8C3A|1|1|U|815
8C3A|1|1|A|816
*
8C3A|1|1|U|901
8C3A|1|1|A|902
8C3A|1|1|G|903
*
8C3A|1|1|C|919
8C3A|1|1|G|920
8C3A|1|1|A|921
8C3A|1|1|A|922

Current chains

Chain 1
25S

Nearby chains

Chain AK
60S ribosomal protein L37-B
Chain AM
60S ribosomal protein L39
Chain j
60S ribosomal protein L2-B
Chain v
60S ribosomal protein L15-A

Coloring options:

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