J3_5ON6_050

3D structure

PDB id

5ON6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of haemanthamine bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

5ON6|1|AR|A|1482

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5ON6_050 not in the Motif Atlas

Homologous match to J3_5TBW_008

Geometric discrepancy: 0.0559

The information below is about J3_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

5ON6|1|AR|U|1479
5ON6|1|AR|G|1480
5ON6|1|AR|A|1481
5ON6|1|AR|A|1482
5ON6|1|AR|G|1483
5ON6|1|AR|U|1484
5ON6|1|AR|G|1485
*
5ON6|1|AR|C|1857
5ON6|1|AR|A|1858
5ON6|1|AR|A|1859
*
5ON6|1|AR|U|1871
5ON6|1|AR|C|1872
5ON6|1|AR|U|1873
5ON6|1|AR|A|1874

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CT

60S ribosomal protein L19-A

Chain DI

60S ribosomal protein L34-A