J3_5OPT_003
3D structure
- PDB id
- 5OPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of KSRP in context of Trypanosoma cruzi 40S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- AGUG*CAG*CUUGAAU
- Length
- 14 nucleotides
- Bulged bases
- 5OPT|1|E|U|891
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5OPT_003 not in the Motif Atlas
- Homologous match to J3_4V88_032
- Geometric discrepancy: 0.315
- The information below is about J3_4V88_032
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_54972.1
- Basepair signature
- cWW-tWW-F-cWW-F-tHS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
5OPT|1|E|A|866
5OPT|1|E|G|867
5OPT|1|E|U|868
5OPT|1|E|G|869
*
5OPT|1|E|C|879
5OPT|1|E|A|880
5OPT|1|E|G|881
*
5OPT|1|E|C|890
5OPT|1|E|U|891
5OPT|1|E|U|892
5OPT|1|E|G|893
5OPT|1|E|A|894
5OPT|1|E|A|895
5OPT|1|E|U|896
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain L
- 40S ribosomal protein S4
- Chain Y
- 40S ribosomal protein S24
- Chain b
- 40S ribosomal protein S9, putative
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