J3_5OT7_005
3D structure
- PDB id
- 5OT7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongation factor G-ribosome complex captures in the absence of inhibitors.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUUUAAUUC*GAAGAACCUUACC*GGGCGAC
- Length
- 29 nucleotides
- Bulged bases
- 5OT7|1|1|A|974, 5OT7|1|1|A|975, 5OT7|1|1|G|976, 5OT7|1|1|A|978, 5OT7|1|1|C|979, 5OT7|1|1|C|980
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5OT7_005 not in the Motif Atlas
- Homologous match to J3_6CZR_020
- Geometric discrepancy: 0.4325
- The information below is about J3_6CZR_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_86907.1
- Basepair signature
- cWW-F-F-F-tSW-F-tSH-tSS-F-F-F-F-F-F-F-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
5OT7|1|1|G|954
5OT7|1|1|U|955
5OT7|1|1|U|956
5OT7|1|1|U|957
5OT7|1|1|A|958
5OT7|1|1|A|959
5OT7|1|1|U|960
5OT7|1|1|U|961
5OT7|1|1|C|962
*
5OT7|1|1|G|973
5OT7|1|1|A|974
5OT7|1|1|A|975
5OT7|1|1|G|976
5OT7|1|1|A|977
5OT7|1|1|A|978
5OT7|1|1|C|979
5OT7|1|1|C|980
5OT7|1|1|U|981
5OT7|1|1|U|982
5OT7|1|1|A|983
5OT7|1|1|C|984
5OT7|1|1|C|985
*
5OT7|1|1|G|1220
5OT7|1|1|G|1221
5OT7|1|1|G|1222
5OT7|1|1|C|1223
5OT7|1|1|G|1224
5OT7|1|1|A|1225
5OT7|1|1|C|1226
Current chains
- Chain 1
- 16S Ribosomal RNA
Nearby chains
- Chain I
- 30S ribosomal protein S10
- Chain L
- 30S ribosomal protein S13
- Chain M
- 30S ribosomal protein S14 type Z
- Chain R
- 30S ribosomal protein S19
- Chain U
- Elongation factor G
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