J3_5OT7_012

3D structure

PDB id

5OT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation factor G-ribosome complex captures in the absence of inhibitors.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAG*CGAACC*GAUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5OT7_012 not in the Motif Atlas

Homologous match to J3_4WF9_003

Geometric discrepancy: 0.4293

The information below is about J3_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.1

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

5OT7|1|4|C|698
5OT7|1|4|A|699
5OT7|1|4|G|700
*
5OT7|1|4|C|732
5OT7|1|4|G|733
5OT7|1|4|A|734
5OT7|1|4|A|735
5OT7|1|4|C|736
5OT7|1|4|C|737
*
5OT7|1|4|G|760
5OT7|1|4|A|761
5OT7|1|4|U|762
5OT7|1|4|G|763

Current chains

Chain 4

23S Ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L34

Chain g

50S ribosomal protein L2