J3_5OT7_014

3D structure

PDB id

5OT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation factor G-ribosome complex captures in the absence of inhibitors.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUAAG*CGG*UCAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5OT7_014 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.1548

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5OT7|1|4|C|1298
5OT7|1|4|G|1299
5OT7|1|4|U|1300
5OT7|1|4|A|1301
5OT7|1|4|A|1302
5OT7|1|4|G|1303
*
5OT7|1|4|C|1625
5OT7|1|4|G|1626
5OT7|1|4|G|1627
*
5OT7|1|4|U|1639
5OT7|1|4|C|1640
5OT7|1|4|A|1641
5OT7|1|4|G|1642

Current chains

Chain 4

23S Ribosomal RNA

Nearby chains