J3_5OT7_015

3D structure

PDB id

5OT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation factor G-ribosome complex captures in the absence of inhibitors.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

5OT7|1|4|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5OT7_015 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.1398

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

5OT7|1|4|C|1306
5OT7|1|4|A|1307
5OT7|1|4|A|1308
5OT7|1|4|G|1309
*
5OT7|1|4|C|1605
5OT7|1|4|G|1606
5OT7|1|4|C|1607
5OT7|1|4|A|1608
5OT7|1|4|A|1609
5OT7|1|4|A|1610
5OT7|1|4|C|1611
*
5OT7|1|4|G|1620
5OT7|1|4|U|1621
5OT7|1|4|G|1622

Current chains

Chain 4

23S Ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L34