J3_5OT7_016

3D structure

PDB id

5OT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation factor G-ribosome complex captures in the absence of inhibitors.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

5OT7|1|4|C|1345, 5OT7|1|4|A|1384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5OT7_016 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.1151

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

5OT7|1|4|G|1344
5OT7|1|4|C|1345
5OT7|1|4|G|1346
5OT7|1|4|G|1347
5OT7|1|4|G|1348
5OT7|1|4|A|1349
5OT7|1|4|C|1350
*
5OT7|1|4|G|1381
5OT7|1|4|G|1382
5OT7|1|4|C|1383
5OT7|1|4|A|1384
5OT7|1|4|G|1385
*
5OT7|1|4|C|1402
5OT7|1|4|C|1403

Current chains

Chain 4

23S Ribosomal RNA

Nearby chains

Chain y

50S ribosomal protein L23