J3_5OT7_017

3D structure

PDB id

5OT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation factor G-ribosome complex captures in the absence of inhibitors.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

5OT7|1|4|A|2198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5OT7_017 not in the Motif Atlas

Homologous match to J3_7RQB_010

Geometric discrepancy: 0.1483

The information below is about J3_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.3

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

5OT7|1|4|U|2091
5OT7|1|4|U|2092
5OT7|1|4|G|2093
*
5OT7|1|4|C|2196
5OT7|1|4|U|2197
5OT7|1|4|A|2198
5OT7|1|4|A|2199
5OT7|1|4|C|2200
*
5OT7|1|4|G|2223
5OT7|1|4|G|2224
5OT7|1|4|A|2225
5OT7|1|4|C|2226
5OT7|1|4|A|2227
5OT7|1|4|G|2228

Current chains

Chain 4

23S Ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L9

Chain W

50S ribosomal protein L28

Chain g

50S ribosomal protein L2