J3_5OT7_020

3D structure

PDB id

5OT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation factor G-ribosome complex captures in the absence of inhibitors.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

5OT7|1|4|A|2518, 5OT7|1|4|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5OT7_020 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.2178

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

5OT7|1|4|C|2517
5OT7|1|4|A|2518
5OT7|1|4|U|2519
5OT7|1|4|C|2520
*
5OT7|1|4|G|2545
5OT7|1|4|U|2546
5OT7|1|4|U|2547
*
5OT7|1|4|A|2561
5OT7|1|4|U|2562
5OT7|1|4|U|2563
5OT7|1|4|A|2564
5OT7|1|4|A|2565
5OT7|1|4|A|2566
5OT7|1|4|G|2567

Current chains

Chain 4

23S Ribosomal RNA

Nearby chains

Chain o

50S ribosomal protein L13

Chain p

50S ribosomal protein L14