J3_5T2A_005
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AC*GAACUACAG*CAU
- Length
- 14 nucleotides
- Bulged bases
- 5T2A|1|2|C|1181
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5T2A_005 not in the Motif Atlas
- Geometric match to J3_1G1X_002
- Geometric discrepancy: 0.2551
- The information below is about J3_1G1X_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.4
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5T2A|1|2|A|1130
5T2A|1|2|C|1131
*
5T2A|1|2|G|1175
5T2A|1|2|A|1176
5T2A|1|2|A|1177
5T2A|1|2|C|1178
5T2A|1|2|U|1179
5T2A|1|2|A|1180
5T2A|1|2|C|1181
5T2A|1|2|A|1182
5T2A|1|2|G|1183
*
5T2A|1|2|C|1190
5T2A|1|2|A|1191
5T2A|1|2|U|1192
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 0
- eS1
- Chain AH
- uS11
- Chain AV
- eS26
- Chain c
- uL2
- Chain m
- eL43
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