J3_5T2A_009
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUUUGG*CGAGAUC*GGCAACA
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5T2A_009 not in the Motif Atlas
- Geometric match to J3_4LFB_007
- Geometric discrepancy: 0.3963
- The information below is about J3_4LFB_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01343.1
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5T2A|1|2|U|1637
5T2A|1|2|U|1638
5T2A|1|2|U|1639
5T2A|1|2|U|1640
5T2A|1|2|G|1641
5T2A|1|2|G|1642
*
5T2A|1|2|C|1681
5T2A|1|2|G|1682
5T2A|1|2|A|1683
5T2A|1|2|G|1684
5T2A|1|2|A|1685
5T2A|1|2|U|1686
5T2A|1|2|C|1687
*
5T2A|1|2|G|1821
5T2A|1|2|G|1822
5T2A|1|2|C|1823
5T2A|1|2|A|1824
5T2A|1|2|A|1825
5T2A|1|2|C|1826
5T2A|1|2|A|1827
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 8
- uS14
- Chain AK
- uS9
- Chain AL
- eS17
- Chain AP
- uS5
- Chain AQ
- uS10
- Chain AX
- uS3
Coloring options: