J3_5T2A_013
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAA*UGUAG*UAUG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5T2A_013 not in the Motif Atlas
- Homologous match to J3_8C3A_004
- Geometric discrepancy: 0.1696
- The information below is about J3_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44724.5
- Basepair signature
- cWW-tSH-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
5T2A|1|A|C|880
5T2A|1|A|A|881
5T2A|1|A|A|882
*
5T2A|1|A|U|914
5T2A|1|A|G|915
5T2A|1|A|U|916
5T2A|1|A|A|917
5T2A|1|A|G|918
*
5T2A|1|A|U|943
5T2A|1|A|A|944
5T2A|1|A|U|945
5T2A|1|A|G|946
Current chains
- Chain A
- LSU-alpha
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain E
- srRNA1
- Chain R
- eL19
- Chain c
- uL2
- Chain m
- eL43
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