J3_5T2A_014
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGGAGCG*CAA*UCUG
- Length
- 14 nucleotides
- Bulged bases
- 5T2A|1|A|A|1589
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5T2A_014 not in the Motif Atlas
- Homologous match to J3_8C3A_006
- Geometric discrepancy: 0.1872
- The information below is about J3_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_10154.2
- Basepair signature
- cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F
- Number of instances in this motif group
- 3
Unit IDs
5T2A|1|A|U|1586
5T2A|1|A|G|1587
5T2A|1|A|G|1588
5T2A|1|A|A|1589
5T2A|1|A|G|1590
5T2A|1|A|C|1591
5T2A|1|A|G|1592
*
5T2A|1|B|C|39
5T2A|1|B|A|40
5T2A|1|B|A|41
*
5T2A|1|B|U|53
5T2A|1|B|C|54
5T2A|1|B|U|55
5T2A|1|B|G|56
Current chains
- Chain A
- LSU-alpha
- Chain B
- LSU-beta
Nearby chains
- Chain E
- srRNA1
- Chain G
- Large subunit ribosomal RNA; LSU rRNA
- Chain R
- eL19
- Chain h
- eL34
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